GNomEx

Our source code is now on GitHub: https://github.com/hci-gnomex/gnomex. Please refer to GitHub for the latest code.

GNomEx is Genomic LIMS and Data Repository. It holds annotated experiments and downstream analysis and serves data tracks to popular genome browsers such as IGB, IGV, and UCSC genome browser. The LIMS handles all aspects of the experiment from order through results delivery. Experiment platforms supported include Illumina HiSeq, MiSeq, iScan, ABI Sanger sequencing, Affy and Agilent Microarrays, Sequenom MassArray and Bioanalyzer.

GNomEx is a web application with a Flash client user interface and a Java backend that runs on Apache Tomcat. MySQL is used for the database, although any modern RDBMS can be used.

Features

Configurable for many different sequencing and experiment platforms
Support for multiple core facilities
Automated billing/customer notifications
Configurable annotations for experiments, samples, or analyses
Built in ABI file viewer

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terooatt Posted 2014-11-13

Excellent! Easy to use.
tammypalazzo Posted 2013-06-25

Very good Software.

2 users found this review helpful.
allinmadison Posted 2013-06-12

Thanks for Gnomex, it's excellent!

1 user found this review helpful.
tfileme Posted 2013-05-25

very good project, thanks!

1 user found this review helpful.

Additional Project Details

Intended Audience

Science/Research

User Interface

Web-based

Programming Language

Flex, Java

Database Environment

MySQL

Related Categories

Java Scientific Engineering, Java Bio-Informatics Software, Flex Scientific Engineering, Flex Bio-Informatics Software

Registered

2010-01-04

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