Search Results for "oxford"
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Showing 23 open source projects for "oxford"
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Deep Lake
Data Lake for Deep Learning. Build, manage, and query datasets
...It can be deployed locally or in the cloud, and it enables you to store all of your data in one place, ranging from simple annotations to large videos. Deep Lake is used by Google, Waymo, Red Cross, Omdena, Yale, & Oxford. Use one API to upload, download, and stream datasets to/from AWS S3/S3-compatible storage, GCP, Activeloop cloud, or local storage. Store images, audios and videos in their native compression. Deeplake automatically decompresses them to raw data only when needed, e.g., when training a model. Treat your cloud datasets as if they are a collection of NumPy arrays in your system's memory. ... -
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Flower
Flower: A Friendly Federated Learning Framework
...Flower allows for a wide range of different configurations depending on the needs of each individual use case. Flower originated from a research project at the University of Oxford, so it was built with AI research in mind. Many components can be extended and overridden to build new state-of-the-art systems. Different machine learning frameworks have different strengths. Flower can be used with any machine learning framework, for example, PyTorch, TensorFlow, Hugging Face Transformers, PyTorch Lightning, scikit-learn, JAX, TFLite, MONAI, fastai, MLX, XGBoost, Pandas for federated analytics, or even raw NumPy for users who enjoy computing gradients by hand. -
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qpidctrl
Qt-based Control of various temperature controllers
A Qt-based application to interface to a number of different temperature controllers. Watlow 988 Series Stanford Research Systems PTC10 Oxford Cryostream Lakeshore LS3xx series -
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IsoQuant
Transcript discovery and quantification with long RNA reads
IsoQuant is a tool for the genome-based analysis of long RNA reads, such as PacBio or Oxford Nanopores. IsoQuant allows reconstructing and quantifying transcript models with high precision and decent recall. If the reference annotation is given, IsoQuant also assigns reads to the annotated isoforms based on their intron and exon structure. IsoQuant further performs annotated gene, isoform, exon, and intron quantification. -
Host LLMs in Production With On-Demand GPUsDeploy your model, get an endpoint, pay only for compute time. No GPU provisioning or infrastructure management required.
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IO91pm
Command-line calculator for Maidenhead- (QTH-, QRA-) Locators.
Keywords: Hamradio, Radio-amateurs, Maidenhead-, QTH-, (QRA-), Locator, Distance and Bearing Calculator, GNU/Linux command-line, LaTeX,- UTF-8-, ASCII-output, GPLv3; based on GM4ANB's book. "IO91pm is the Maidenhead-Locator for Maidenhead" ========================================= Background --------------- * For another little project, I wanted a QTH-Locator calculator for the UNIX (GNU/Linux, bash) command-line. * There are many, some very good, online QTH resources, but I wanted... -
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Dadda
Dadda Chrome word translation extension
A good-looking Chrome word translation (Sogou) plug-in, with its own vocabulary book and toast word memory, which can be synchronized with Youdao and scallop words. Beautiful word translation plugin/ Let you recite words on Chrome (can be synchronized to scallops, your words). After the "Scallop Word Synchronization" function is enabled, the favorite vocabulary will be synchronized to the scallop word, but you must log in to the web version of scallop, and vice versa. There are five stages... -
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pycoQC
pycoQC computes metrics and generates Interactive QC plots
PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data. PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generate a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+. -
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OxMar-en-español
Versión en español del software OxMaR.
Versión en español del software gratuito OxMaR para minimización y aleatorización de estudios clínicos. ( Guillaumes S, O’Callaghan CA. Gaceta Sanitaria DOI: 10.1016/j.gaceta.2018.07.013 ) . El sistema OxMaR, acrónimo de “Oxford Minimization and Randomization”, fue originalmente publicado como software de código abierto en el año 2014 (O’Callaghan CA. PLoS ONE. 2014;9:e110761). Permite realizar aleatorización simple, asignación adaptativa mediante minimización, con o sin un componente variable de aleatorización asociada. Esta versión en lengua española permite la ocultación completa de la secuencia de aleatorización. ... -
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ForceGen
Derives force constants from Gaussian QM for Gromacs MD
...Examples of use include the derivation of bond force constants and equilibrium values for: -bonded metals in protein active sites -modified amino acids -small molecules/drug molecules A zip of examples files can be found by following the "Browse All Files" link. Written by Dr Anthony Nash (Oxford) Supported by Dr Thomas Collier, Prof Helen Birch & -
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Central Proteomics Facilities Pipeline
A data analysis pipeline for shotgun mass-spectrometry proteomics.
...To access up-to-date algorithms for the analysis of proteomics data, other tools would now be preferred. However: * Limited fixes have been made on the main master branch by Phil Charles at the University of Oxford. * As of 2019, limited maintenance is being carried out by myself (now in the BioHPC high performance computing group at UTSW), to allow CPFP to install and run on RHEL 7 / CentOS 7, with updated TPP 5.1.0 and search tools. This updated code can be found in the utsw-biohpc branch of the git repository, and may become a 2.2.0 release if time and testing allows. -- David Trudgian - 2019/01/03 -
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MANTIS R Package
Multi-locus ANTIgenic Simulator R-package for multi-strain pathogens
This repository contains the most updated code version of MANTIS, the Multi-locus ANTIgenic Simulator R-package. MANTIS is developed and maintained by the Evolutionary Ecology of Infectious Disease (EEID) research group at the Department of Zoology, University of Oxford, UK. For theoretical background please refer to 'MANTIS: an R package that simulates multilocus models of pathogen evolution' (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0598-9 OPEN ACCESS) At the moment, MANTIS is not available on CRAN. To build a source package of MANTIS, use the script buildPackage.R To install MANTIS use 'install.packages(file.tar.gz,type="src",repo=NULL)' To test use test_V3.3_code.R Contact the main author of the publication above for further details. ... -
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lr2rmats
Long read to rMATS
lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis. More information can be found at https://sourceforge.net/p/lr2rmats/wiki/Home/ -
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LOCUST
Custom Sequence Locus Typer
...Publication: Brinkac LM, Beck E, Inman J, Venepally P, Fouts DE, Sutton G. LOCUST: A Custom Sequence Locus Typer for Classifying Microbial Isolates. Bioinformatics (Oxford, England). 2017 Jan 27; https://www.ncbi.nlm.nih.gov/pubmed/28130240 -
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R_poRe
An R package to enable visualisation of nanopore sequencing data
The Oxford Nanopore MinION is a revolutionary sequencer with a unique model of data delivery, requiring novel tools for the novice user. This package enables organisation and visualisation of MinION data on the MinION laptop -
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CIMA
Body Mass Index (BMI) and Other Indexes Calculator with Classification
CIMA is a program that provides an easy way to calculate a diversity of body indexes related to the fat content and energy needs, providing a way to control our weight: 1 - Body Mass Index (BMI), including both the traditional and the new proposed formulas, and provides a classification of the results. The evaluation takes in account the age groups (adults, children and the elderly). 2 - Body Adiposity Index (BAI). 3 - Basal Metabolic Rate (BMR) for Men and for Women. 4 -... -
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IceTimer
Graphical timer and match scheduler for pick-up ice hockey sessions
An application to display a schedule of and time short round-robin style matches for up to 30 teams with up to 3 simultaneous matches in play. Primarily intended for use in Oxford University Alternative Ice Hockey sessions but could easily be modified for use in similar informal sports tournaments. Match fixture lists generated using Jonathan Rennison's Match Fixture List Generator (matchgen.sourceforge.net). Interface written in Java using Processing (processing.org). -
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A program to generate match fixture lists for numbered teams. Intended primarily for the Oxford University Alternative Ice Hockey sessions, but can be applied to similar.
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qpidctrl-orig
Qt-based Control of various temperature controllers
A Qt-based application to interface to a number of different temperature controllers. Watlow 988 Series Stanford Research Systems PTC10 Oxford Cryostream Lakeshore LS3xx series -
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SanDic
Sanskrit-English Dictionary
...Poona: Prasad Prakashan, 1957-1959. 3v. Arthur Anthony Macdonell A practical Sanskrit dictionary with transliteration, accentuation, and etymological analysis throughout. London: Oxford University Press, 1929. Maṇḍala Pati dāsa List of verbal roots with final forms http://sourceforge.net/p/dhatu-patha Monier Williams Sanskrit-English Dictionary -
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Python interface for the Mission Oriented Software Suite (MOOS), developed and hosted at Oxford University [http://www.robots.ox.ac.uk/~mobile/MOOS/wiki/pmwiki.php]
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VoiceScribe is a simple highlighting editor. Its purpose is to faciliate the task of creating and correcting transcripts for inclusion in the Vienna Oxford International Corpus of English (VOICE).
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APoDIx is a Portable Bio-Database Index system. It retrieves biological database information from the website of Oxford Journals, save them in a local position, and provides a viewer for display and search the information.
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Time Recording System is a web based application that enables users to record their time weekly for scheduling and financial purposes. It's currently being used by Oxford Archaeology to record the employees' time sheets.
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