# chromAlias.sql was originally generated by the autoSql program, which also 
# generated chromAlias.c and chromAlias.h.  This creates the database representation of
# an object which can be loaded and saved from RAM in a fairly 
# automatic way.

#correspondence of UCSC chromosome names to refseq, genbank, and ensembl names
CREATE TABLE chromAlias (
    alias varchar(255) not null,	# external name
    chrom varchar(255) not null,	# UCSC genome browser chromosome name
    source varchar(255) not null,	# comma separated list, when available: refseq,genbank,ensembl
              #Indices
    PRIMARY KEY(alias),
    KEY(chrom),
    KEY(source)
);
