## ENSEMBL VARIANT EFFECT PREDICTOR format (UCSC Variant Annotation Integrator)
## Connected to UCSC database hg19
## Variants: indelTrimVcf (input/annoGrator/indelTrim.vcf)
## Transcripts: EnsemblGenes ... (hg19.wgEncodeGencodeBasicV19)
Uploaded Variation	Location	Allele	Gene	Feature	Feature type	Consequence	Position in cDNA	Position in CDS	Position in protein	Amino acid change	Codon change	Co-located Variation	Extra
indel	chr11:373409-373410	C	B4GALNT4	ENST00000329962.6	Transcript	intron_variant	-	-	-	-	-	-	INTRON=6/19
indel	chr11:1905147	TT	LSP1	ENST00000311604.3	Transcript	intron_variant	-	-	-	-	-	-	INTRON=4/10
indel	chr11:1905147	TT	LSP1	ENST00000381775.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=5/11
indel	chr11:1905147	TT	LSP1	ENST00000405957.2	Transcript	intron_variant	-	-	-	-	-	-	INTRON=4/10
indel	chr11:1905147	TT	LSP1	ENST00000406638.2	Transcript	intron_variant	-	-	-	-	-	-	INTRON=4/10
indel	chr11:1905147	TT	LSP1	ENST00000485341.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=3/9
indel	chr11:6411931-6411942	-	SMPD1	ENST00000356761.2	Transcript	inframe_deletion	277-288	103-114	35	LVLA/-	CTGGTGCTGGCG/-	-	EXON=1/6
indel	chr11:6411931-6411942	CTGGCG	SMPD1	ENST00000356761.2	Transcript	inframe_deletion	277	103	35	LV/-	CTGGTG/-	-	EXON=1/6
indel	chr11:6411931-6411942	-	SMPD1	ENST00000299397.3	Transcript	inframe_deletion	277-288	103-114	35	LVLA/-	CTGGTGCTGGCG/-	-	EXON=1/5
indel	chr11:6411931-6411942	CTGGCG	SMPD1	ENST00000299397.3	Transcript	inframe_deletion	277	103	35	LV/-	CTGGTG/-	-	EXON=1/5
indel	chr11:6411931-6411942	-	SMPD1	ENST00000342245.4	Transcript	inframe_deletion	271-282	103-114	35	LVLA/-	CTGGTGCTGGCG/-	-	EXON=1/6
indel	chr11:6411931-6411942	CTGGCG	SMPD1	ENST00000342245.4	Transcript	inframe_deletion	271	103	35	LV/-	CTGGTG/-	-	EXON=1/6
indel	chr11:6411931-6411942	-	SMPD1	ENST00000533196.1	Transcript	non_coding_transcript_exon_variant	262	-	-	-	-	-	EXON=1/2
indel	chr11:6411931-6411942	CTGGCG	SMPD1	ENST00000533196.1	Transcript	non_coding_transcript_exon_variant	262	-	-	-	-	-	EXON=1/2
indel	chr11:6411931-6411942	-	SMPD1	ENST00000527275.1	Transcript	inframe_deletion	227-238	103-114	35	LVLA/-	CTGGTGCTGGCG/-	-	EXON=1/6
indel	chr11:6411931-6411942	CTGGCG	SMPD1	ENST00000527275.1	Transcript	inframe_deletion	227	103	35	LV/-	CTGGTG/-	-	EXON=1/6
indel	chr11:6411931-6411942	-	APBB1	ENST00000526240.1	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=4424
indel	chr11:6411931-6411942	-	APBB1	ENST00000608655.1	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=4424
indel	chr11:6411931-6411942	-	APBB1	ENST00000608704.1	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=4424
indel	chr11:6411931-6411942	-	APBB1	ENST00000299402.6	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=4424
indel	chr11:6411931-6411942	-	APBB1	ENST00000609360.1	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=4424
indel	chr11:6411931-6411942	-	APBB1	ENST00000389906.2	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=4424
indel	chr11:6411931-6411942	-	APBB1	ENST00000311051.3	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=4424
indel	chr11:6411931-6411942	-	APBB1	ENST00000608394.1	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=4442
indel	chr11:6411931-6411942	-	APBB1	ENST00000529519.1	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=4462
indel	chr11:6411931-6411942	-	APBB1	ENST00000608645.1	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=4603
indel	chr11:6411931-6411942	-	APBB1	ENST00000609331.1	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=4729
indel	chr11:6411931-6411942	-	APBB1	ENST00000530885.1	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=4767
indel	chr11:6637740-6637742	T	TAF10	ENST00000299424.4	Transcript	upstream_gene_variant	-	-	-	-	-	-	DISTANCE=3842
indel	chr11:6637740-6637742	T	TAF10	ENST00000531760.1	Transcript	upstream_gene_variant	-	-	-	-	-	-	DISTANCE=3970
indel	chr11:6637740-6637742	T	TPP1	ENST00000299427.6	Transcript	splice_region_variant	-	-	-	-	-	-	INTRON=7/12
indel	chr11:6637740-6637742	T	TPP1	ENST00000533371.1	Transcript	splice_region_variant	-	-	-	-	-	-	INTRON=6/11
indel	chr11:6637740-6637742	T	TPP1	ENST00000534644.1	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=502
indel	chr11:6637740-6637742	T	TPP1	ENST00000528657.1	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=2220
indel	chr11:6637740-6637742	T	RP11-732A19.9	ENST00000545572.1	Transcript	upstream_gene_variant	-	-	-	-	-	-	DISTANCE=2281
indel	chr11:6637740-6637742	T	DCHS1	ENST00000299441.3	Transcript	downstream_gene_variant	-	-	-	-	-	-	DISTANCE=4816
indel	chr11:6637740-6637742	T	RP11-732A19.5	ENST00000526456.1	Transcript	upstream_gene_variant	-	-	-	-	-	-	DISTANCE=4942
indel	chr11:56128673-56128674	T	OR8J1	ENST00000303039.3	Transcript	3_prime_UTR_variant	983-984	-	-	-	-	-	EXON=1/1
indel	chr11:56128673-56128674	T	OR8J1	ENST00000303039.3	Transcript	coding_sequence_variant	983-984	951-952	1	-/-	-/-	-	EXON=1/1
indel	chr11:56128673-56128674	TA	OR8J1	ENST00000303039.3	Transcript	3_prime_UTR_variant	983-984	-	-	-	-	-	EXON=1/1
indel	chr11:56128673-56128674	TA	OR8J1	ENST00000303039.3	Transcript	coding_sequence_variant	983-984	951-952	1	-/-	-/-	-	EXON=1/1
indel	chr11:85979637-85979638	GTGTGT	EED	ENST00000263360.6	Transcript	intron_variant	-	-	-	-	-	-	INTRON=9/11
indel	chr11:85979637-85979638	GTGTGT	EED	ENST00000528180.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=7/9
indel	chr11:85979637-85979638	GTGTGT	EED	ENST00000327320.4	Transcript	intron_variant	-	-	-	-	-	-	INTRON=9/10
indel	chr11:85979637-85979638	GTGTGT	EED	ENST00000351625.6	Transcript	intron_variant	-	-	-	-	-	-	INTRON=9/12
indelASH	chr11:85979637-85979638	GTGTGT	EED	ENST00000263360.6	Transcript	intron_variant	-	-	-	-	-	-	INTRON=9/11
indelASH	chr11:85979637-85979638	GTGTGT	EED	ENST00000528180.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=7/9
indelASH	chr11:85979637-85979638	GTGTGT	EED	ENST00000327320.4	Transcript	intron_variant	-	-	-	-	-	-	INTRON=9/10
indelASH	chr11:85979637-85979638	GTGTGT	EED	ENST00000351625.6	Transcript	intron_variant	-	-	-	-	-	-	INTRON=9/12
indel	chr11:89914894-89914898	-	NAALAD2	ENST00000534061.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=17/18
indel	chr11:89914894-89914898	-	NAALAD2	ENST00000321955.4	Transcript	intron_variant	-	-	-	-	-	-	INTRON=16/17
indel	chr11:89914894-89914898	-	NAALAD2	ENST00000375944.3	Transcript	intron_variant	-	-	-	-	-	-	INTRON=6/6
indelASH	chr11:89914894-89914898	-	NAALAD2	ENST00000534061.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=17/18
indelASH	chr11:89914894-89914898	-	NAALAD2	ENST00000321955.4	Transcript	intron_variant	-	-	-	-	-	-	INTRON=16/17
indelASH	chr11:89914894-89914898	-	NAALAD2	ENST00000375944.3	Transcript	intron_variant	-	-	-	-	-	-	INTRON=6/6
indel	chr11:107686741-107686742	AC	SLC35F2	ENST00000525815.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=1/7
indel	chr11:107686741-107686742	AC	SLC35F2	ENST00000525071.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=4/10
indel	chr11:107686741-107686742	AC	SLC35F2	ENST00000265836.7	Transcript	intron_variant	-	-	-	-	-	-	INTRON=1/6
indel	chr11:107686741-107686742	AC	SLC35F2	ENST00000375682.4	Transcript	intron_variant	-	-	-	-	-	-	INTRON=1/7
indel	chr11:107686741-107686742	AC	SLC35F2	ENST00000429869.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=4/10
indelASH	chr11:107686741-107686742	AC	SLC35F2	ENST00000525815.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=1/7
indelASH	chr11:107686741-107686742	AC	SLC35F2	ENST00000525071.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=4/10
indelASH	chr11:107686741-107686742	AC	SLC35F2	ENST00000265836.7	Transcript	intron_variant	-	-	-	-	-	-	INTRON=1/6
indelASH	chr11:107686741-107686742	AC	SLC35F2	ENST00000375682.4	Transcript	intron_variant	-	-	-	-	-	-	INTRON=1/7
indelASH	chr11:107686741-107686742	AC	SLC35F2	ENST00000429869.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=4/10
snp	chr11:108014662	A	ACAT1	ENST00000265838.4	Transcript	intron_variant	-	-	-	-	-	-	INTRON=9/11
snp	chr11:108014684	G	ACAT1	ENST00000265838.4	Transcript	intron_variant	-	-	-	-	-	-	INTRON=9/11
duff	chr11:125452300-125452301	C	EI24	ENST00000530985.1	Transcript	non_coding_transcript_exon_variant	1272-1273	-	-	-	-	-	EXON=10/11
duff	chr11:125452300-125452301	C	EI24	ENST00000343678.4	Transcript	frameshift_variant	974-975	732-733	245	PAKHISSSCASSPWWSS*/PRKAYLFQLRLFSLVVFLX	cccgcaaagcat...tggtcttcttaa(54 nt)/Ccccgcaaagca...tggtcttcttaa(55 nt)	-	EXON=9/11
duff	chr11:125452300-125452301	C	EI24	ENST00000278903.6	Transcript	splice_acceptor_variant	-	-	-	-	-	-	INTRON=10/11
duff	chr11:125452300-125452301	C	STT3A-AS1	ENST00000530526.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=1/2
duff	chr11:125452300-125452301	C	STT3A-AS1	ENST00000532714.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=1/1
duffASH	chr11:125452300-125452301	C	EI24	ENST00000530985.1	Transcript	non_coding_transcript_exon_variant	1272-1273	-	-	-	-	-	EXON=10/11
duffASH	chr11:125452300-125452301	C	EI24	ENST00000343678.4	Transcript	frameshift_variant	974-975	732-733	245	PAKHISSSCASSPWWSS*/PRKAYLFQLRLFSLVVFLX	cccgcaaagcat...tggtcttcttaa(54 nt)/Ccccgcaaagca...tggtcttcttaa(55 nt)	-	EXON=9/11
duffASH	chr11:125452300-125452301	C	EI24	ENST00000278903.6	Transcript	splice_acceptor_variant	-	-	-	-	-	-	INTRON=10/11
duffASH	chr11:125452300-125452301	C	STT3A-AS1	ENST00000530526.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=1/2
duffASH	chr11:125452300-125452301	C	STT3A-AS1	ENST00000532714.1	Transcript	intron_variant	-	-	-	-	-	-	INTRON=1/1
